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Collins, J. N. 1998. Bay Area Wetlands Ecosystem Goals Project: Key Baylands Habitats. SFEI Contribution No. 122. San Francisco Estuary Institute.
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Collins, J. N. 1998. Bay Area Wetlands Ecosystem Goals Project: Key Baylands Species. SFEI Contribution No. 121. San Francisco Estuary Institute.
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Monroe, M.; Olofson, P. R.; Collins, J. N.; Grossinger, R. M.; Haltiner, J.; Wilcox, C. 1999. Baylands Ecosystem Habitat Goals. SFEI Contribution No. 330. U. S. Environmental Protection Agency, San Francisco, Calif./S.F. Bay Regional Water Quality Control Board, Oakland, Calif. p 328.
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Collins, J. N.; Stralberg, D. 2004. Baylands Vegetation Mapping Protocol (Version 1.0). SFEI Contribution No. 304. San Francisco Estuary Institute: Oakland, CA.
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Collins, J. N. 2003. California Rapid Assessment Method (CRAM) - Part 2. SFEI Contribution No. 285. San Francisco Estuary Institute.
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Collins, J. N.; Sutula, M.; Stein, E.; Jones, P. 2002. California Rapid Assessment Method for Wetlands v. 1.0. SFEI Contribution No. 246. San Francisco Estuary Institute. p 18.
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Collins, J. N.; Brewster, E.; Grossinger, R. M. 1999. Conceptual models of freshwater influences on tidal marsh form and function, with an historical perspective. SFEI Contribution No. 327. Department of Environmental Services: City of San Jose, CA. p 237 pp.
Collins, J. N.; May, M. 1998. Contamination of Tidal Wetlands. SFEI Contribution No. 228. Richmond CA.
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Collins, J. N. 2007. CRAM Evaluation of Wetland Conditions. SFEI Contribution No. 544. Elk Grove, California. p 15.
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Lowe, S.; Robinson, A.; Frontiera, P.; Cayce, K.; Collins, J. N. 2014. Creating Landscape Profiles of Aquatic Resource Abundance, Diversity and Condition. SFEI Contribution No. 725. San Francisco Estuary Institute - Aquatic Science Center: Richmond, CA. p 21.
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